Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQLLNFY--N-IDDKLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYEFLKY--YEIPVIIVATKADKIPRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL
1WF3 Chain:A ((4-170))
------------------------KTYSGFVAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA--LGEFMDQEVYEAL---ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAMKAYHELL---PEAEPRMLSALDERQVAELKADLLALM
General information:
TITO was launched using:
RESULT:
Template:
1WF3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61319 for 1274 contacts (-48.1/contact) +
2D Compatibility (PS) -17105 + (NN) -2726 + (LL) 2120
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -87180.0 ( -68.43 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_1WF3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WF3-query.scw
PDB file :
Tito_Scwrl_1WF3.pdb
: