Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
1IF2 Chain:A ((6-242))
---QPIAAANWKCNGTTASIEKLVQ--VFNEHTISHD-VQCVVAPTFVHIPLVQAKLRNPKYVIS--AQN-AIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE---------------
General information:
TITO was launched using:
RESULT:
Template:
1IF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110813 for 1939 contacts (-57.1/contact) +
2D Compatibility (PS) -26547 + (NN) -18637 + (LL) 1624
1D Compatibility (HY) -16800 + (ID) 5050
Total energy: -176223.0 ( -90.88 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1IF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IF2-query.scw
PDB file :
Tito_Scwrl_1IF2.pdb
: