Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKDKLHWLAMHGVIRGIAAIGIRRGDLQARLIADPAVATDPVPFYDEVRSHGALVRNRANYLTVDHRLAHDLLRSDDFRVVSFGENLPPPLRWLERRTRGDQLHPLREPSLLAVEPPDHTRYRKTVSAVFTSRAVSALRDLVEQTAINLLDRFAEQPGIVDVVGRYCSQLPIVVISEILGVPEHDRPRVLEF------GELAAPSLDIGIPWRQYLR-VQQGIRGFDCWLEGHLQQLRHAPGDDLMSQLIQIAESGDNETQLDETELRAIAGLVLVAGFETTVNLLGNGIRMLLDTPEHLATLRQHPELWPNTVEEILRLDSPVQLTARVACRDVEVAGVRIKRGEVVVIYLAAANRDPAVFPDPHRFDIER-PNAGRHLAFSTGRHFCLGAALARAEGEVGLRTFFDRFPDVRAAGAGSRRDTRVLRGWSTLPVTLGPARSMVSP |
| 4GGV Chain:A ((89-396)) | --------------------------------------------------------------------------------------------------------PLLEGDMSQMDPPRHRKYRQLVSRAFTPRLVADMETRVADITRELLDAVDGKPEI-EIAADLAYPLPVIVIAELLGVPAGDRDLFKKWADDIIEGFSGFSFLDTSGQGEQDVRDATERLRPLLDYMAGHVTERRRTPREDLLTHLVQAEVDGE---RLTDNEIVNVANILLVTGHITTTMTLGNTVLCLDADPEVAAKVRADRSLVPGAIEEALRVLSPSAALARGTSREVEVAGTVIPKDQIVMLWLGAGNRDPRQFTDPEVYDPTRDPNP--HFGFGRGIHFCLGAPLARLEGRVALNALFDRFPVLRTDPA---------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4GGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -180811 for 2213 contacts (-81.7/contact) +
2D Compatibility (PS) -31989 + (NN) -12802 + (LL) 8304
1D Compatibility (HY) -18800 + (ID) 5800
Total energy: -241898.0 ( -109.31 by residue)
QMean score : 0.473
|
|
|