Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNDAVPAGNFVPPLILHSDHGGSAMSSSAHRGRILHFLGDPAKLGDKAWEYFEDGLLWIEHGHVRALDHATYLLPQLPADLPLEEHPQRLLLPGFVDCHVHYPQLGVIASY---GTQLLDWLETHTFPAEQ----RFADAGYAAAQAELFLDELLRHGTTTALVFGTVHA-----VSAEAFFQAAQKRRLRMIAGKVLMDRNAP-PALC-----DTAASGYAESRALIERWH---GNGRLQYAVTPRFAPTSSPEQLAAAARLLDEYPGVYLHTHLSENLKEVAWVGELFPQAQDYLDVYHRAGLVGERSVFAHGIHLSERECRCLAHKNAALAHCPSSNLFIGSGLFDLGRAQQYGIRVGIGSDVGGG-TSLSLLANLADAYKIQQLR-----GTSLDPFQALYLATLGGARALDLDGLVGNFLPGREADFVALDLAATPMIAQRMEHARGLADTLFVLNTLGDDRAVAETWVMGERRHVKG |
| 3LS9 Chain:A ((18-434)) | -------------------------------------------------RELEDADILIDGPKIVAVGKDLSD----RSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADY-DVRLHTHFYEPLDA-GMSDHLY--GMTPWRFLEKHGWASDRVWLAHAVVPPREEIPEFADAGVAIAHLIAPDLRMGWGLAPIREYLDAGITVGFGTTGSASNDGGNLLGDLRLAALAHRPADPNEPEKWLSARELLRMATRGSAECLGRP-DLGVLEEGRAADIACWRLDGVDRVG--------VHDPAIGLIMTGLSDRASLVVVNGQVLVENE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -228180 for 3463 contacts (-65.9/contact) +
2D Compatibility (PS) -42344 + (NN) -23161 + (LL) 2520
1D Compatibility (HY) -9600 + (ID) 4350
Total energy: -305115.0 ( -88.11 by residue)
QMean score : 0.482
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