Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLLSGQVALVTGGAAGIGRATALAFAAAGVKVVVADLDSAGGEGTVEAIRQAGGEALFIRCDVTRDAEVKALVEGCAAAYGRLDYAFNNAGIEIEQGKLADGNEAEFDAIMAVNVKGVWLCMKHQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCP-AVIDTDMFRRAYEAD--PRKAEFAAAMHPLGRVGRVEEIAAAVLYLCCDNAGFTTGIALPVDGGATAI
4ITU Chain:A ((45-269))
------------------------------GAKVALIDLDQGLAERSAAMLSTGGAVAKGFGADVTKAADITAAITSAEQTIGSLTGLVNNAGIA-GFGSVHDADAAAWDRIMAVNVTGTFLASKAALAGMLERHKGTIVNFGSVAGLVGIPTMAAYCAAKGAIVNLTRQMAADYSGRGVRVNAVCPGTVTSTGMGQQLLGSDTSPEVQARRLAKYPIGRFGTPEDIAEAVIFLLSDQAAFVTGAAFAVDGGMTAI
General information:
TITO was launched using:
RESULT:
Template:
4ITU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115482 for 1751 contacts (-66.0/contact) +
2D Compatibility (PS) -24210 + (NN) -9323 + (LL) 2604
1D Compatibility (HY) -12000 + (ID) 4600
Total energy: -163011.0 ( -93.10 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_4ITU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ITU-query.scw
PDB file :
Tito_Scwrl_4ITU.pdb
: