Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDDAFSEEGSAQPRHDAQRPALAPRSDGFDIHTYHPDFVADPYPLLRLIRSRAPVCRD-----QASIWWISRYADVSACLRDRRFSADPARLGAAGVRQGGASW-FGHQQLQPLARFYDNFMLFNDAPRHTRLRRLFAPAFGPDAVRRWEARIEVLVEELLDSLLERREPDLLRDFAEPLTIRVAAELFGFPREDTGQLLPWGRDLAAGLDLAASHG--DAGQINRSAVA---FSDYLQRQARGWSDGSSRPPSGAAPSILDGAAMLEAGLGLEDLVAAYAMVFMAAFETTISMVGNATLALLTHPDQLDLLRRCPELAANAVEELLRFDGAVRGGVRCTLEEVEIGGQRIPPGEKVWLSFLAANRDPEMFAAPDRLQLQRANAKQHVAFAHGPHYCLGAYLARLELQCALRGLVRRRFALASEPTDLRWRRSSVFRTLERLPIVPEGDAQKTCE |
2Z3U Chain:A ((9-382)) | ----------------------------FDLMGWDKKDIADPYPVYRRYREAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNRRLGRN-ARVASGDTDTAPVPIPTEHRALRTVV---ENWLVFLDPPHHTELRSLLTTEFSPSIVTGLRPRIAELASALLDRLRAQRRPDLVEGFAAPLPILVISALLGIPEEDHT----WLRANAVALQEASTTRARDGRGYARAEAASQEFTRYFRREVDRRGGDDRDDLLTLLVRARDTGS----PLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRDVLDELRTTPESTPAAVEELMRYDPPVQAVTRWAYEDIRLGDHDIPRGSRVVALLGSANRDPARFPDPDVLDVHRA-AERQVGFGLGIHYCLGATLARAEAEIGLRALL---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Z3U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -216366 for 2963 contacts (-73.0/contact) +
2D Compatibility (PS) -39752 + (NN) -23079 + (LL) 4872
1D Compatibility (HY) -24000 + (ID) 6450
Total energy: -304775.0 ( -102.86 by residue)
QMean score : 0.506
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