Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQNSLLDGRRVLLTGGARGLGYAFAEAAARAGARVVIADILEERVQRSARELAEQGLDISGLPLDLADPVSIERCVAAAVERLGGLDGLVNNASITNSGGKSCEELEIEVFDRVLQVNVRGTWLMTRACLPALRESGRGAVVNLASDTPLWGAPNLLAYSASKGALIAMTRSLARELGGDGITVNAIAPGLVEVEAT-EYVPAARHRLYREQRALQRGQQPADVCGAVLFALSDLSRFITGQTLPVNGGFVMP
2D1Y Chain:B ((3-245))
-----LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE-----GKEVAE-AIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPG--SALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAI--RTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGM---
General information:
TITO was launched using:
RESULT:
Template:
2D1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158598 for 2076 contacts (-76.4/contact) +
2D Compatibility (PS) -25448 + (NN) -7808 + (LL) 952
1D Compatibility (HY) -15200 + (ID) 4900
Total energy: -211002.0 ( -101.64 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_2D1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D1Y-query.scw
PDB file :
Tito_Scwrl_2D1Y.pdb
: