Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAAEN--AEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
1N55 Chain:A ((6-249))
--QPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAIAK--SGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLR-KWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP-EFRDIIDA---
General information:
TITO was launched using:
RESULT:
Template:
1N55.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158646 for 2057 contacts (-77.1/contact) +
2D Compatibility (PS) -26384 + (NN) -9817 + (LL) 388
1D Compatibility (HY) -20000 + (ID) 5300
Total energy: -219759.0 ( -106.83 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1N55.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N55-query.scw
PDB file :
Tito_Scwrl_1N55.pdb
: