Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNKEKYLTNFSEAKRKKATQKYNIIKPFILGEQSLSSISKSKGIALSTLYRWNKSYKEQGLKGLIYATKADKGTRKIEPKIIDEIERLALMNKRNSIATIHRKTTNYCKENNFDIPSYKQIYSVIKAMPKSVIDFSHQGEKYYQNKYDLIQIRESSRPNEIWQADHTLLDIFILDQKGNINRPWLTIIMDDYSRAIAGYFLSFDAPNAQNTALTLHQAIWNKNDTNWPVCGIPEKFYTDHGSDFTSHHMEQVAIDLKINLMFSKVGVPRGRGKIERFFQTVNQTFLEQLPGYINNNDTPSNLINFHNFEEKLRYFLIEDYNQKEHSTI-HTTPISRWNSNHFFPNMPSSLEQLDLLLLEIPKSRKVHSDGIHFQGFRYSNTNLAAYVGEYVLIRYNPNDMAEIRVFYRDEFLCTAICPEIADYSIDIKDIQHARSQRRKHLKQNIASPSTTELIKEEKNCGYSPQETTKNVKKLKRYRND |
| 3L3U Chain:A ((8-154)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------SPGIWQLDCTHL-----------EGKVILVAVHVASGYIEAEVIPA--ETGQETAYFLLKLAGR--------WP-VKTVHTDNGSNFTSTTVKAACDWAGIKQEDGIPYNPQSQGVIESMNKELKKIIGQVR-------------DQAEHLKTAVQM-AVFIHNHKRKGGIGGYSAGERIVDI-------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L3U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -62870 for 1116 contacts (-56.3/contact) +
2D Compatibility (PS) -16257 + (NN) -9009 + (LL) 20932
1D Compatibility (HY) -1200 + (ID) 1400
Total energy: -69804.0 ( -62.55 by residue)
QMean score : 0.301
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