Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSIKKGPFIDDHLMKKTLKAKE----GKDNRPIKTWSRRSTILPEMIGFTYNVHNGRVFVPVYITENHVGYKLGEFAPTRTFKGHKGSVQKKIGK
3JAM Chain:P ((53-130))
-----------PAGLMKKLRAAKLSAPENEKPAVVRTHLRNMIIVPEMIGSVVGVYNGKVFNQVEIRPEMVGHYLGEFSITYTPVRHGR--------
General information:
TITO was launched using:
RESULT:
Template:
3JAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15019 for 437 contacts (-34.4/contact) +
2D Compatibility (PS) -8637 + (NN) -7129 + (LL) 1116
1D Compatibility (HY) -3600 + (ID) 1500
Total energy: -34769.0 ( -79.56 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_3JAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JAM-query.scw
PDB file :
Tito_Scwrl_3JAM.pdb
: