Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRLEIVDSKLRQAKKTEEYFNAIRTNIQFSGKENKILAITSVREGEGKSTTSTSLALSLAQAGFKTLLIDADTRNSVMSGTFKATGTIKGLTNYLSGNADLGDIICETNVPRLMVVPSGKVPPNPTALLQNAYFNKMIEAIKNIFDYIIIDTPPIGLVVDAAIIANACDGFILVTQAGRIKRNYVEKAKEQMEQSGSKFLGIILNKVNESVATYGDYGDYGNYGKRDRKRK
1G3Q Chain:A ((2-176))
----------------------------------GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVYVLPGAVDWEHVL-KADPRKLPEVIKSLKDKFDFILIDCPAGLQLD-AMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEVPLLAVI
General information:
TITO was launched using:
RESULT:
Template:
1G3Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111389 for 1550 contacts (-71.9/contact) +
2D Compatibility (PS) -19061 + (NN) -5366 + (LL) 2980
1D Compatibility (HY) -8000 + (ID) 2150
Total energy: -142986.0 ( -92.25 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1G3Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G3Q-query.scw
PDB file :
Tito_Scwrl_1G3Q.pdb
: