Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIENQKLLLIYAPH---LDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIKRHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
3CNG Chain:A ((37-162))
------------QNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP------HISQVYMLFRAKLLDL-DFFP--GIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEERHHGQPAF
General information:
TITO was launched using:
RESULT:
Template:
3CNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78456 for 951 contacts (-82.5/contact) +
2D Compatibility (PS) -13890 + (NN) -6801 + (LL) 1736
1D Compatibility (HY) -4800 + (ID) 1300
Total energy: -103511.0 ( -108.84 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_3CNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CNG-query.scw
PDB file :
Tito_Scwrl_3CNG.pdb
: