Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDSKYQCVKLNDGHFMPVLGFGTYAPAEVPKSKALEAVKLAIEAGFHHIDSAHVYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLCATWEAMEKCKDAGLAKSIGVSNFNHRLLEMILNKPGLKYKPVCNQVECHPYFNQRKLLDFCKSKDIVLVAYSALGSHREEPWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTSEEMKAIDGLNRNVRYLTLDIFAGPPNYPFSDEY |
4GIE Chain:A ((9-278)) | MNCNYNCVTLHNSVRMPQLGLGVWRAQ--DGAETANAVRWAIEAGYRHIDTAYIYSNERGVGQGIRES----GVPREEVWVTTKVWNSDQGYEKTLAAFERSRELLGLEYIDLYLIHWPGKK--------------------KFVDTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCK--IRPMVNQVELHPLFQQRTLREFCKQHNIAITAWSPLGSGEEA--------GILKNHVLGEIAKKHNKSPAQVVIRWDIQHGIVTIPKSTNKGRIQENFNVWDFKLTEEEMRQIDELNEDKRIG----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GIE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175727 for 2328 contacts (-75.5/contact) +
2D Compatibility (PS) -29859 + (NN) -21204 + (LL) 1456
1D Compatibility (HY) -23600 + (ID) 5650
Total energy: -254584.0 ( -109.36 by residue)
QMean score : 0.618
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