Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNNNFLLSYACFPNKTRGRYFKEQEDENRSCFQRDRDRIIHSNAFRKLEYKTQ------VFINYEHDYYRTRLTHSLEVAQIARSIARRLG-------LDEDITECI---ALAHDLGHPPFGHTGENALKRAVQDLNLDNEKYEFDHNVQAIRILTYLEQKHADFDGMNLSWEVVEGVAKHNGPLLGRNAVSYTNNQLLLEYNEKYNLKLEEFSSIEAQVASIADDIAYSVHDLDDELRANLVTIEDLLNIPLIGKTFKDVESRYSELPQNKLIHESLSRTIGMMISDVVSQTEKNIEDYKIKSVEDVRSLNKMLVTFSPEVANATKEVKKFNMEKIYRSYKLNRTMNKAKRIVEELFQCFYENPRLLPIEWNKLAHKFQRSVVICDYISGMTDRFAIHEHRRIFDTSYEMTSF |
4TO5 Chain:D ((22-103)) | --------------------------------------RIIDTPQFQRLRYIKQLGGGYYVFPGASHN----RFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCRNLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TO5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10176 for 364 contacts (-28.0/contact) +
2D Compatibility (PS) -7017 + (NN) -1890 + (LL) 2072
1D Compatibility (HY) -6400 + (ID) 1350
Total energy: -24761.0 ( -68.02 by residue)
QMean score : 0.372
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