Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MSYDVIISGGGLLGLITAVGLSNNSV-----SVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILDENSPITVHYNHKMVSEEPMG-----YVINSTVIWNAINNNFLNKLN----IYSLHSYRTITCDAG----------YVEVTLGNNQ------------------------------------------KLISSLLICAEGKNSKLPGLFSMS---IIKFDYKQSSIVFNVKHELHHQNLAVEQFFPGGPFAILPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGE---VKLDGERKSYPLSFASAKKLYKS-RVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRI---FCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV----- |
| 1FOH Chain:A ((1-461)) | TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST--KVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERHILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSDHESTPLQFGHKTENSLFHSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTL---GFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQ-------FTPEVVIANAKKIFHPY---TFDVQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLT---GRAKRDILKTYEEERHAFAQALIDFDHQFSRLFSGRPAKDV--ADEMGVSMDVFK---EAFVKGNEFASGTAINYDE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1FOH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -199981 for 3111 contacts (-64.3/contact) +
2D Compatibility (PS) -38872 + (NN) -7300 + (LL) 1292
1D Compatibility (HY) -4800 + (ID) 3200
Total energy: -252861.0 ( -81.28 by residue)
QMean score : 0.336
|
|
|