Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRLEGRKFLVTGASGGIGQAIVKTMHKAGAILCVSGTKKETLEGVAKLYEKNIYI---LPCNLLNTEEVNQLINRASKLMGGLDGLVCNAGVTQDSLLLRMTDEAWQKVVDINLSSTFKLNREAYKKLTKNNWGRIINISSIIGLTGNAGQANYAASKAGIIAMSKSIAKEVASRNITVNCIAPGFMDTKMTKILTEEQKKKILDNIPMKRMGTGEEIAAGVLFLASDEAKYITGHVLNINGGLFM
4BNW Chain:D ((25-268))
---LQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGI------VRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4BNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146403 for 1993 contacts (-73.5/contact) +
2D Compatibility (PS) -25398 + (NN) -8414 + (LL) 860
1D Compatibility (HY) -18400 + (ID) 5200
Total energy: -202955.0 ( -101.83 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4BNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNW-query.scw
PDB file :
Tito_Scwrl_4BNW.pdb
: