Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLEN-IDL--NYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILN--------QKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
3PSV Chain:A ((59-244))
-----------------------------------------------------FSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFDRRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQN--KTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIG---TATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSA
General information:
TITO was launched using:
RESULT:
Template:
3PSV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89720 for 1290 contacts (-69.6/contact) +
2D Compatibility (PS) -18251 + (NN) -5986 + (LL) 4908
1D Compatibility (HY) -13600 + (ID) 3250
Total energy: -125899.0 ( -97.60 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3PSV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PSV-query.scw
PDB file :
Tito_Scwrl_3PSV.pdb
: