Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNGLEEKGYKAAVIKFDAASESDFVEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIENNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGLYM
4BNY Chain:B ((23-268))
MSLQGKVALVTGASRGIGQAIALELGRLG-AVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNA--------------EWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4BNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113848 for 1968 contacts (-57.8/contact) +
2D Compatibility (PS) -25325 + (NN) -9478 + (LL) 1492
1D Compatibility (HY) -18400 + (ID) 4550
Total energy: -170109.0 ( -86.44 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4BNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNY-query.scw
PDB file :
Tito_Scwrl_4BNY.pdb
: