Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEFILKIQAKDSKGLVSAISATIANKGYNIVKNDEFVDPLKQRFFMRLKIQKEMKPLNTEIKEQEERSLKTALFKALENFSELLIEVILTHKKNIILLATKESHCLGDLLLRVYGGELNAQILGVISNHE--ILRPLVEKFDIPYFYAPCVD---QILHEKEVLATIKDLELKHKVSADLLVLAKYMRILSHDFTKRYENQILNIHHSFLPAFIGANPYQQAFERGVKVIGATAHFVNESLDAGPIILQDTLPINHNYSVEKMRLAGKDIEKLVLARALKLVLEDRVFVHENKTVVF
2YWR Chain:A ((1-199))
--------------------------------------------------------------------------------------------MLKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKK------KGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRIIIDGRKVIVK
General information:
TITO was launched using:
RESULT:
Template:
2YWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166664 for 1585 contacts (-105.2/contact) +
2D Compatibility (PS) -20829 + (NN) -10566 + (LL) 9164
1D Compatibility (HY) -13600 + (ID) 2950
Total energy: -205445.0 ( -129.62 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2YWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWR-query.scw
PDB file :
Tito_Scwrl_2YWR.pdb
: