Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTESKFPKDFLWGGAVAANQCEGAYLEDGKGLSLVDILPTVEDGRWEALFNPSKALATDYGFYPSHESIDFYHRYKEDIKLMAEMGFKCFRMSISWPRIFPNGDETTPNEKGLAFYDAVFDECHKYGIEPVVTINHFDTPLEVFKKYGGWKNRKCIDFYLNFCEAIFTRYKDKVKYWMTFNEINMILHLPYIGGGLDVTKEDNPEEVKY------QAAHHQLVASALATKLGHEINPENQIGCMLAAGNTYPMTC-NPKDVWKS-IEADREGYFFIDVQARGYYPSYT----KRFFKEHNINIKMEDGD---LDALRDHTVDYVAFSYYSSRLTSA-------------DPEKNKETEGNVFATLKNPYLKASEWGWQIDPLGLRITMNTIYDRYQ--KPLFIVENGLGAVDTVEEDGSITDDYRIDYMREHVREMGEAIEDGVELLGYTPWGCIDLVSAGSGEMKKRYGFIYVDRDNKGNGTLNRSKKKSFDWYKKVIETNGKDID |
2PBG Chain:A ((1-465)) | MTKT-LPKDFIFGGATAAYQAEGATHTDGKGPVAWD--KYLEDNYW----------------YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEV-NEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP-EALHSNGDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKF-------PPGIKYDLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYCDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLN-DFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEF-VDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNG-YEKRYGLFYVDFD-----TQERYPKKSAHWYKKLAETQ----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PBG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179808 for 3760 contacts (-47.8/contact) +
2D Compatibility (PS) -45670 + (NN) -15887 + (LL) 1492
1D Compatibility (HY) -30000 + (ID) 8550
Total energy: -278423.0 ( -74.05 by residue)
QMean score : 0.517
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