Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDEKEKNLNENSENESTPKREVEDTLHTPESAQPVQETPIVEGVTPEGEKFAGATEDAAEASSTNAFFEEASNKESEPARPAPGPRRAGTTGGGAVPPNRVNNGGSGNGNGEPPKRGKHFIGYFLTALIGVIIGGLIIFFVAWDNGDNADTTSNSNNKATKVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKANGKAYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFGDSDSLKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPGNSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSLRDVDTIPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGQKVTNSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKLEAAKTTT |
3PV2 Chain:A ((6-340)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPSMAPVLKNIMPAIVNVAVQGYLPN-------RKFESIGSGVIIDPN--NGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAK-NLKSLVIGDSDKLEVGDFVVAIGNPFGL--SQSATFGIVSALK-----------------NFIQTDAAINPGNSGGALVNAKGELIGINTAIL-----VGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPEL---AQ-AMGYP-EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISL--LRVGSTVKIIVERDNKPLTLSAVVTD----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -112107 for 2392 contacts (-46.9/contact) +
2D Compatibility (PS) -30015 + (NN) -1863 + (LL) 6404
1D Compatibility (HY) -19600 + (ID) 5250
Total energy: -162431.0 ( -67.91 by residue)
QMean score : 0.483
|
|
|