Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKININVILILLVVLLMVSPFFFNKTGEYGGSDGEAEAEITKIDPSYEPWFEPLYEPKSGEIESLLFTLQGCIGTGIIAYVIGVSRGKRKAENDVNH
1M4H Chain:B ((98-161))
------NVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLV--KQTHVPN-LFSLQLC-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1M4H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6041 for 284 contacts (-21.3/contact) +
2D Compatibility (PS) -7179 + (NN) -3557 + (LL) 2152
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -18975.0 ( -66.81 by residue)
QMean score : 0.045
(partial model without unconserved sides chains):
PDB file :
Tito_1M4H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M4H-query.scw
PDB file :
Tito_Scwrl_1M4H.pdb
: