Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKEIKYAFVTGASGEIGQAICMSLARAGWNLYLHYYQNKETVEKLLPLLQAEEVDVILIQADFDDLAS----LTEIEKQVFQLDAFIHAAGHAHYSLFQDTT--------DTNIAELWNVHMFMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSEEEKDNLRQEIPLNRFAQPEEIAETVAFLTSKKASYITGEVLRLNGGWLM
4N5N Chain:A ((28-269))
-----RIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNV--------TKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGGLHM
General information:
TITO was launched using:
RESULT:
Template:
4N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180141 for 1883 contacts (-95.7/contact) +
2D Compatibility (PS) -24860 + (NN) -7350 + (LL) 1408
1D Compatibility (HY) -15200 + (ID) 4050
Total energy: -230193.0 ( -122.25 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_4N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N5N-query.scw
PDB file :
Tito_Scwrl_4N5N.pdb
: