Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENF--VTHSKNGY-YDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
3PMP Chain:B ((17-141))
-----------------------GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP---------------------------TSWLDGKHVVFGEVIEGLDIVRKV-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47400 for 890 contacts (-53.3/contact) +
2D Compatibility (PS) -12844 + (NN) -7337 + (LL) 4908
1D Compatibility (HY) -10400 + (ID) 3450
Total energy: -76523.0 ( -85.98 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PMP-query.scw
PDB file :
Tito_Scwrl_3PMP.pdb
: