Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
2RGX Chain:A ((3-203))
--LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG--
General information:
TITO was launched using:
RESULT:
Template:
2RGX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50845 for 1539 contacts (-33.0/contact) +
2D Compatibility (PS) -21820 + (NN) -13037 + (LL) 576
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -107676.0 ( -69.96 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2RGX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RGX-query.scw
PDB file :
Tito_Scwrl_2RGX.pdb
: