Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGIG--YGPGTLMLIKDHINV---IGTNPLIGENLEEFGPRFPDMSDAYTATYRQKA----HQIAEKQNIKLEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITN-FAAGFQS--ELNHEEVVEVTQRIKEDFKGLVKSLVAEL
2OC9 Chain:A ((8-282))
----EDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPR------AGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQR--ELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANGEEVLAAGKQAAQKLEQFVSILMASI
General information:
TITO was launched using:
RESULT:
Template:
2OC9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146024 for 2109 contacts (-69.2/contact) +
2D Compatibility (PS) -27016 + (NN) -5000 + (LL) 1016
1D Compatibility (HY) -28000 + (ID) 6100
Total energy: -211124.0 ( -100.11 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_2OC9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OC9-query.scw
PDB file :
Tito_Scwrl_2OC9.pdb
: