Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFPLAIGVLKGALPFMADLIKHIDTY---------LEMDFMDVSSYGNSTVSSGEVKIIKDLD-TSVEGRDILIIEDIIDSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDYAERYRNLPYIGVLKPAVYES
5BSK Chain:D ((31-208))
----DLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIR---------------------LSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRT----GYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVAVI-------
General information:
TITO was launched using:
RESULT:
Template:
5BSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137967 for 1116 contacts (-123.6/contact) +
2D Compatibility (PS) -15503 + (NN) -3066 + (LL) 1908
1D Compatibility (HY) -19200 + (ID) 2900
Total energy: -176728.0 ( -158.36 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_5BSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BSK-query.scw
PDB file :
Tito_Scwrl_5BSK.pdb
: