Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETKAFDQIDNAPEERQRGITINIAHVE-----------YQTDK------------RHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATD-GPMPQTREHVLLARQVGVPYILVALNKADAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGDAKWVASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGT----VVTGRVERGVINVNEEVEI-----------VGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGL---LLRGVKREDVERGQVVTKPGTTTPHTEFEGQVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNTNISVKLIQPVAMDEGLRFAIREGGRTVGAGRVTKIIK |
| 1KK2 Chain:A ((6-322)) | -------SRQAEVNIGMVGHVDHGKTTLTKALTGVW---------------TD--SEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIEGT-VAENAPIIPISALHG--------ANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPG-LVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE--IVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPP--------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KK2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107788 for 2129 contacts (-50.6/contact) +
2D Compatibility (PS) -29250 + (NN) -13645 + (LL) 7740
1D Compatibility (HY) -20800 + (ID) 5300
Total energy: -169043.0 ( -79.40 by residue)
QMean score : 0.497
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