Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVRVGDPELVLDPYDYDFHEDPYPYYRRLRDEAPLYRNEERNFWAVSRHHDVLQGFRDSTALSNAYGVSLDPSSRTSEAYRVMSML-AMDDPAHLRMRTLVSKGFTPRRIRELEPQVLELARIHLDSALQTESFDFVAEFAGKLPMDVISELIGVPDTDRARIRALADAVLHREDGVADVPPPAMAASI-----ELMRYYADLIAEFRRRPANNLTSALLAAELDGDRLSDQEIMAFLFLMVIAGNETTTKLLANAVYWAAHHPGQLARVFADHSRIPMWVEETLRYDTSSQILARTVAHDLTLYDTTIPEGEVLLLLPGSANRDDRVFDDPDDYRIGREI-GCKLVSFGSGAHFCLGAHLARMEARVALGALLRRIRNYEVD-DDNVVRVHSSNVRGFAHLPISVQAR |
2WIO Chain:A ((53-421)) | -------------------------WLGTMREKQPVWQDR-YGVWHVFRHADVQTVLRDTATFSS------DPTRVIEGASPTPGMIHEIDPPEHRALRKVVSSAFTPRTISDLEPRIRDVTRSLLADA--GESFDLVDVLAFPLPVTIVAELLGLPPMDHEQFGDWSGALVDIQ--MDDPTDPALAERIADVLNPLTAYLKARCAERRADPGDDLISRLVLAEVDGRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAAEDPGRIPAIVEEVLRYRPPFPQMQRTTTKATEVAGVPIPADVMVNTWVLSANRDSDAHDDPDRFDPSRKSGGAAQLSFGHGVHFCLGAPLARLENRVALEEIIARFGRLTVDRDDERLRHFEQIVLGTRHLPV----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2WIO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -224811 for 2940 contacts (-76.5/contact) +
2D Compatibility (PS) -39873 + (NN) -26465 + (LL) 1920
1D Compatibility (HY) -20800 + (ID) 6650
Total energy: -316679.0 ( -107.71 by residue)
QMean score : 0.469
|
|
|