Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQF-TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
4NMU Chain:A ((9-146))
-----------------------------------MQIGKEAPNFVVTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIALDADETDIAVKNFVNQYGLKFPVAIDKGQKIIGTYGVGPLPTSFLIDKDGKVVEQI--IGEQTKEQLEGYLKKIT-
General information:
TITO was launched using:
RESULT:
Template:
4NMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90440 for 1043 contacts (-86.7/contact) +
2D Compatibility (PS) -14574 + (NN) -7468 + (LL) 3196
1D Compatibility (HY) -8400 + (ID) 1550
Total energy: -119236.0 ( -114.32 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4NMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NMU-query.scw
PDB file :
Tito_Scwrl_4NMU.pdb
: