Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQLPRVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNA---PVSVSATTTDGLGLTGRGEGLAAIATALVVSLR
2AMT Chain:D ((2-156))
-----RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK--
General information:
TITO was launched using:
RESULT:
Template:
2AMT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130417 for 1312 contacts (-99.4/contact) +
2D Compatibility (PS) -17120 + (NN) -11979 + (LL) 560
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -172556.0 ( -131.52 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_2AMT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AMT-query.scw
PDB file :
Tito_Scwrl_2AMT.pdb
: