Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------------------------------------MSKNARYAW-----RLSLGGLLLGLLACAVY---------LLAVPLGFKYGEIQVGHGLEHEGRIAWDAAGVPHIRAQSLE---DGYFLLGYSHARD---------------RLWQMEFARRYAGGTLSEVFGAKTLPMDRFARTLGFRRTAEGIYANLDAPTRVLLQRYSDGINAYLELAPAALPLEFSLVRHE-------RPGPWGPVDSLSLHLLYSWTL----------------SANLGMQLQRLALAE------HLDLARINEVFAPYPGERPPATRDYASLYRSLHG-TPDAGKLLGQLPGSNVEGIG-------SNNWVVSASRSATGKPLLANDPHLRLTNPAAFYLASLKIPGLSLTGANFAGAPLFVIGHNQRIAWGYTNTGSHIQDAYLERVDPQ-----------------------------------DPRRYLTPDGYRPFETRLERIAVRDGETVSLEV------------RSTRHGPVISDIYE---------PARLPQAQRDRLVIALAWTGLDRHDKT----FPSLLAINRAEGWEQFLDAAANFGVPPQNMVYADVEGNIGYVS-AGRVPLRGADDD-----LHGLAPSPGW--------ESRYDWVGYVPESAKP-----RSLNPREGFIATANQ----RIVPPDNAFDFGHDW-VLPYRYDRIREWLGGPGQRTLEDSLELQNDEFSSVM--ASLLPKMLEQVSDPELRASEAFALLQGW--NHQAAADLAAPLIAGYWVRAFTRE--LLQP---RIGTQLLASGWNQRNYDGFLRLILDGQADLRFWCGQEQGCDLKLNQSLRRALDELRA------------AHGSAPSGWKWG-----------EAHAALAEHVPFHKTPLRALFDL--KNNKGGDNFSVNV--------------GRFDYSDPANPFNTRIAATLRMVIDLADFDNSRYALSTRN---------------SGL---PFDGATDLNELWARGAYIRIADDAPDATDRQLVLRPSASSSGEPRP----- |
| 4M5D Chain:A ((81-1237)) | TATESYDIHIARETAELFKSNIFKLQIDELLEQVKLKQKHVLKVEKFLHKLYDILQEIPDWEEKSLAEVDSFFKNKIVSVPFVDPKPIPQNTNYKFNYKKPDISLIGSFA--LKAGIYQPNGSSIDTLLTMPKELFEKKDFLNFRCLHK-RSVYLAYLTHHLLILLKKDKLDSFLQLEYSYFDNDPLLPILRISCSKDYNFYKTRFSINLLIGFPYKVFEPKKLLPNRNCIRI-LPATPLYNFSVLSSSTHENYLKYLYKTKKQTESFVEATVLGRLWLQQRGFSSNMSHSGSLGGFGTFEFTILMAALLNGGGINSNKILLHGFSSYQLFKGVIKYLATMDLCHDGHLQFHSNPASKYIDEGFQTPTLFDKSTKVNILTKMTVSSYQILKEYAGETLRMLNNVVQDQFSNIFLTNISRFDNLKYDLCYDVQLPL-GKYNNLETSLAATFGSMERVKFITLENFLAHKITNVARYAL--GDRIKYIQIEMVGQKSDFPITKRKVYSNTGGNHFNFDFVRVKLIVNPSECDKLVTKGPAHSETMSTEAAVFKNFWGIKSSLRRFKDGSITHCCVWSTSSSEPIISSIVNFALQKHVSKKAQISNETIKKFHNFLPLPNLPSSAKTSVLNLSSFFNLKKS--FDDLYKIIFQMKLPLSVKSILPVGSAFRYTSLCQPVPFAYSDPDFFQDVILEFETSPKWPDEITSLEKAKTAFLLKIQEELSANSSTYRSFFSRDESIPYNLEIVTLNILTPE---GYGFKFRVLTERDEILYLRAIANARNELKPELEATFLKFTAKYLASVRHTRTLENISHSYQFYSPVVRLFKRWLDTHLLLGHITDELAELIAIKPFVDPAPYFIPGSLENGFLKVLKFISQWNWKDD-PLILD-------LVKPEERLTLAQYKGIQMNFTNLRNSDPNGTHLQFFVASKNDPSGILYSSGIPLPIATRLTALAKVAVNLLQTHGLNQQTINLLFTPGLKDYDFVVDLRTPIGLKSSCGILSAPSNFPENLNDLSEKMDPTYQLVKYLNLKYKNSLILSSRKYIGVNGGEKGDKNVITGLIKPLFKGAHKFRV--NLDCNVKPVDDENVILNKEAIFHEIAAFGNDMVINFETD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118979 for 5545 contacts (-21.5/contact) +
2D Compatibility (PS) -83742 + (NN) -34764 + (LL) 744
1D Compatibility (HY) -34000 + (ID) 7700
Total energy: -278441.0 ( -50.21 by residue)
QMean score : 0.162
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