Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQNSLLDGRRVLLTGGARGLGYAFAEAAARAGARVVIADILEERVQRSARELAEQGLDISGLPLDLADPVSIERCVAAAVERLGGLDGLVNNASITNSGGKSCEELEIEVFDRVLQVNVRGTWLMTRACLPALRESGRGAVVNLASDTPLWGAPNLLAYSASKGALIAMTRSLARELGGDGITVNAIAPGLVEVEAT-EYV-PAARHRLYREQRALQRGQQPADVCGAVLFALSDLSRFITGQTLPVNGGFVMP
2D1Y Chain:A ((3-245))
-----LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE-----GKEVAE-AIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPG--SALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIA----RRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGM---
General information:
TITO was launched using:
RESULT:
Template:
2D1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156065 for 2089 contacts (-74.7/contact) +
2D Compatibility (PS) -25117 + (NN) -7050 + (LL) 1196
1D Compatibility (HY) -15200 + (ID) 4900
Total energy: -207136.0 ( -99.16 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2D1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D1Y-query.scw
PDB file :
Tito_Scwrl_2D1Y.pdb
: