Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVILLGAPGAGKGTQARFITEKFGIPQISTGDMLRAAVKAGSPLGQQVKGVMDSGGLVSDDIIIALIKERITEADCAKGFLFDGFPRTIPQAEALKDA----GVTIDHVVEIAVDDEEIVSRIAGRRVHPASGRVYHTEHNPPKVAGKDDVTGEELIQREDDKEETVRHRLSVYHSQTKPLVDFYQKLSAAEGTPKYHSIAGVGSVEQITAKVLSALS
4JLP Chain:B ((1-178))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNV---IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQKEDDKPEVIKKRLEVYREQTAPLIEYYKK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JLP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74185 for 1257 contacts (-59.0/contact) +
2D Compatibility (PS) -18856 + (NN) -7590 + (LL) 2424
1D Compatibility (HY) -18000 + (ID) 4400
Total energy: -120607.0 ( -95.95 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_4JLP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLP-query.scw
PDB file :
Tito_Scwrl_4JLP.pdb
: