Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATRLAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRS-ARGVLRGLHYQIR-QAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDAPLLSEKDRQGKAFADADCFP
3RYK Chain:A ((25-198))
MKVIETNFTDAKLLEPRLFGDDRGFFTESYNKKVLET-LGVTHSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTS-PILSDKDRILPLL-------
General information:
TITO was launched using:
RESULT:
Template:
3RYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83778 for 1312 contacts (-63.9/contact) +
2D Compatibility (PS) -18062 + (NN) -3872 + (LL) 472
1D Compatibility (HY) -14400 + (ID) 4200
Total energy: -123840.0 ( -94.39 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_3RYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYK-query.scw
PDB file :
Tito_Scwrl_3RYK.pdb
: