Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
2VQS Chain:A ((12-208))
-----------TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYER------------PLKYLQELHELHEDWLIH---PQSCKVLVLDAD------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VQS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96135 for 1376 contacts (-69.9/contact) +
2D Compatibility (PS) -20016 + (NN) -10608 + (LL) 4800
1D Compatibility (HY) -28400 + (ID) 9100
Total energy: -159459.0 ( -115.89 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_2VQS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQS-query.scw
PDB file :
Tito_Scwrl_2VQS.pdb
: