Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSPECARAAGDAPLRSLEQANRTRFPFFSDVKGDHRLVLAAVETTVLVLIFAVSLLGNVCALVLVARRRRRGATACLVLNLFCADLLFI-SAIPLVLAVRWTEAWLLGPVACHLLFYVMTLSGSVTILTLAAVSLERMVCIVHLQRGVRGPGRRARAVLLALIWGYS-AVAALPLCVFFRVVPQRLPGADQEISICTLIWPTIPGEISWDVSFV----TLNFLVPGLVIVISYSKILQTSEHLLDARAVVTHSEITKASRKRLTVSLAYSESHQIRVSQQDFRLFRTLFLLMVSFFIMWSPIIITILLILIQNFKQDLVIWPSLFFWVVAFTFANSAL-NPILYNM--TLCRNEWKKIFCCFWFPEKGAILTDTSVKRNDLSIISG |
3C9L Chain:A ((39-332)) | -------------------------------------MLAAYMFLLIMLGFPINFL---TLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCS------CGIDYYT-PHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVK---EAAAQQQESATTQKAEKEVT---------------------RMVIIMVIAFLICWLPYAGVAFYI----FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----DDE--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -362477 for 2504 contacts (-144.8/contact) +
2D Compatibility (PS) -28981 + (NN) -11934 + (LL) 5652
1D Compatibility (HY) -27600 + (ID) 3850
Total energy: -429190.0 ( -171.40 by residue)
QMean score : 0.210
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