Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPIANDTQFHTSSFLLLGIPGLEDVHIWIGFPFFSVYLIALLGNAAIFFVIQTEQSLHEPMYYCLAMLDSIDLSLSTATIPKMLGIFWFNIKEISFGGYLSQMFFIHFF----TVMESIVLVAMAFDRYIAICKPLWYTMILT-SKIISLIAGIAVLRSLYMVIPLVFLLLRLPFCGHRIIPHTYCEHMGIARLAC---ASIKVNIMFGLGSISLLLLDVLLIILSHIRILYAVFC--------LPSWEAR---LKALNTCGSHIGVILAFSTPAFFSFFTHCFGHDIPQYIHIFLANLYVVV-----PPTLNPVIYGVRTKHIRETVLRIFFKTDH |
| 2YDV Chain:A ((15-302)) | ----------------------------------AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAI------STGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP----MLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ-------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250490 for 1942 contacts (-129.0/contact) +
2D Compatibility (PS) -25921 + (NN) -6489 + (LL) 3868
1D Compatibility (HY) -21200 + (ID) 3200
Total energy: -303432.0 ( -156.25 by residue)
QMean score : 0.153
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