Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGGGNITEITYFILLGFSDFPRIIKVLFTIFLVIYITSLAWNLSLIVLIRMDSHLHTPMYFFLSNLSFIDVCYISSTVPKMLSNLLQEQQTITFVGCIIQYF-----IFSTMGLSESCLMTAMAYDRYAAICNPLLYSSIMSPT------LCVWMVLGAYMTGLTASLFQIGALLQLHFCGSNVIRHFFCDMPQLLILSCTDTFFVQVMTAILTMFFGIASALVIMI-----SYGYIGISIMKITSAKGRSKAFNTCASHLTAVSLFYTSGIFVYLSSSSGGSSSFDRFASVFYTVVIPMLNPLIYSLRNKEIKDALKRLQKRKCC |
| 3SN6 Chain:R ((200-388)) | ------------------------------------------NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT--KTWTFGNFWCEFWTSIDVLCVTASIETLCVI---AVDRYFAITSPFKYQSLLTKNKARVIILMVWIV-----SGLTSFL-----PIQMHWYR---QEAINCYAEE----TCCD-FFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109405 for 1034 contacts (-105.8/contact) +
2D Compatibility (PS) -17530 + (NN) -2951 + (LL) 6108
1D Compatibility (HY) -15600 + (ID) 2500
Total energy: -141878.0 ( -137.21 by residue)
QMean score : 0.050
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