Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDNITSIREFLLLGFPVGPRIQMLLFGLFSLFYVFTLLGNGTILGLISLDSRLHAPMYFFLSHLAVVDIAYACNTVPRMLVNLLHPAK-PISFAGRMMQTFLFSTFAVTECLLLVVMSYDLYVAICHPL---RYLAIMTWRVCITLAVTSWTTGVLLSLIHLVLLLPLPFCRPQKIYHFFCEILAVLKLACADTHIN-ENMVLAGAISGLVGPLSTIVVSYMCILCAILQIQSREVQRKAFRTCFSHLCVIGLVYGTAIIMYVGPRYGNPKEQKKYLLLFHSLFNPMLNPLICSLRNSEVKNTLKRVLGVERAL |
| 4NC3 Chain:A ((43-247)) | ------------------------------------TIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYNSRATAFIKITVV---W-------LISIGIAIPVP------IKGIET-VDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHA-LQKKAADLEDN-WETLNDNLKVIEKADNAAQVKDALTKMRAKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155004 for 1224 contacts (-126.6/contact) +
2D Compatibility (PS) -20166 + (NN) -3481 + (LL) 4272
1D Compatibility (HY) -14000 + (ID) 2600
Total energy: -190979.0 ( -156.03 by residue)
QMean score : 0.172
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