Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNENNETLTRGFTLMGLFTHNKCSGFFFGVICAVFFMAMIANGVMIFLINIDPHLHTPMYFLLSHLSVIDTLYISTIVPKMLVDYLMGEGTISFIACTAQCFLYMGFMGAEFFLLGL--MAYDRYVAICNPLRYPVLISWRVCWMILASSWFGGALDSFLLTPITMSLPFCASHQINHFFCEAPTMLRLACG-------DKTTYETVMYVCCVAMLLIPFSVVTASYTRILITVHQMTSAEGR----KKAFATCSSHMMVVTL--------FYGAALYTYTLPQSYHTPIKDKVFSAFYTILTPLLNPLIYSLRNRDVMGALKRVVARC |
| 4J4Q Chain:A ((67-312)) | -----------------------------------------------------KLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFF--ATLGGEIALWSLVVLAIERYVVVCKPMSN-FRFGENHAIMGVAFTW-------------VMALA-CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTI-PAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174483 for 1574 contacts (-110.9/contact) +
2D Compatibility (PS) -22949 + (NN) -5102 + (LL) 5008
1D Compatibility (HY) -21200 + (ID) 2850
Total energy: -221576.0 ( -140.77 by residue)
QMean score : 0.237
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