Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNPANHSQVAGFVLLGLSQVWELRFVFFTVFSAVYFMTVVGNLLIVVIVTSDPHLHTTMYFLLGNLSFLDFCYSSITAPRMLVDLLSGNPTISFGGCLTQLFFFHFIGGIKIFLLTVMAYDRYIAISQPLHYTLIMNQTVCALLMAASWVGGFIHSIVQIALTIQLPF--CGPDKLDNFYCDVPQLIKLAC--TDTFVLELLMVSNNGLVTLMCFLVLLGSYTALLVMLRSHSREGRS-KALST------CASHIAVVTLIFVPC---IYVYTRPFRTFPMDKA--------VSVLYTIVTPMLNPAIYTLRNKEVIMAMKKLWR----RKKDPIGPLEHRPLH
2YDV Chain:A ((8-313))-------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF-----AIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ---STLQKEVHAAKSLAIIVGLFALCWLPLHI-INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLY


General information:
TITO was launched using:
RESULT:

Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -258523 for 2041 contacts (-126.7/contact) +
2D Compatibility (PS) -28166 + (NN) -14970 + (LL) 3176
1D Compatibility (HY) -22800 + (ID) 3550
Total energy: -324833.0 ( -159.15 by residue)
QMean score : 0.307

(partial model without unconserved sides chains):
PDB file : Tito_2YDV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YDV-query.scw
PDB file : Tito_Scwrl_2YDV.pdb: