Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNPANHSQVAGFVLLGLSQVWELRFVFFTVFSAVYFMTVVGNLLIVVIVTSDPHLHTTMYFLLGNLSFLDFCYSSITAPRMLVDLLSGNPTISFGGCLTQLFFFHFIGGIKIFLLTVMAYDRYIAISQPLHYTLIMNQTVCALLMAASWVGGFIHSIVQIALTIQLPF--CGPDKLDNFYCDVPQLIKLAC--TDTFVLELLMVSNNGLVTLMCFLVLLGSYTALLVMLRSHSREGRS-KALST------CASHIAVVTLIFVPC---IYVYTRPFRTFPMDKA--------VSVLYTIVTPMLNPAIYTLRNKEVIMAMKKLWR----RKKDPIGPLEHRPLH |
2YDV Chain:A ((8-313)) | -------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF-----AIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ---STLQKEVHAAKSLAIIVGLFALCWLPLHI-INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258523 for 2041 contacts (-126.7/contact) +
2D Compatibility (PS) -28166 + (NN) -14970 + (LL) 3176
1D Compatibility (HY) -22800 + (ID) 3550
Total energy: -324833.0 ( -159.15 by residue)
QMean score : 0.307
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