Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGDHMVLGSSVTDKKAIILVTILLLLRLVAIAGNGFITAALGVEWVLRRML-LPCDKLLVSLGASRFCLQSVVMGKTIYVFL-HPMAFPYNPVLQFLAFQWDFLNAATLWSSTWLSVFYCVKIAT-FTHPVFFWLKHKLSGWLPWMLFSSVGLSSFTTILFFIGNHRMYQNYLRNHLQPWNVTGDSIRSYCEKFYLFPLKMITWTMPTAVFFICMILLITSLGRHRKKALLTTS------------------------------------------------------------------------------------------------------------------------------------------G------------FREPSVQAHIKALLALLSFAMLFISYFLSLVFS-AAGIF----PPLDFKFWVWESVIYLCAAVHPIILLFSNCRLRAVLKSRRSSRCGTP |
| 3PBL Chain:A ((41-472)) | -------------------YALSYCALILAIVFGNGLVCMAVLK----ERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGT--GQSSCRRVALMITAVWVLAFAVSCPLLFGFNT-------T--G-DP--TVCSISNP--DFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PBL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230024 for 2047 contacts (-112.4/contact) +
2D Compatibility (PS) -27708 + (NN) -9882 + (LL) 3176
1D Compatibility (HY) -12800 + (ID) 1950
Total energy: -279188.0 ( -136.39 by residue)
QMean score : 0.335
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