Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------LEMSCIQNLLPCKPYLPGTEPPPPVCCLPLKDMVAHQAQCLCSALANPDLLKDFN------VTMDGALKLAKTCGASVDMSVCKNGNH
1Q3O Chain:A ((3-106))
DYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR----AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRH
General information:
TITO was launched using:
RESULT:
Template:
1Q3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39320 for 454 contacts (-86.6/contact) +
2D Compatibility (PS) -8399 + (NN) -8302 + (LL) 408
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -58963.0 ( -129.87 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1Q3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q3O-query.scw
PDB file :
Tito_Scwrl_1Q3O.pdb
: