Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCNQQTRVLISTILCRIAIWYDHMLFIDLVNIISREFCSAKDVYYNILQLFGIAGLGAMVRPLGASVFGHIGDRYGRKMALTIAILLISIPSSLVAFIPGYSRVGITSTILLFAIHVTQGIALGAEQGGSSVYLIEHLSNKKKLGMFFGIISFGRSIGVLLFVMIVIICKKITDFNAWGWRMPFTFSAIWGLMSAY-SIYTLGETPAYEKNREQRNLPNLPIIELVKRYKRALILAVLISVPVNVAV-GFTIFLRTIAKEIVQVEMYVTTYVNEIVLIITSILIPISSIALGMLADRVGKERIAILFIIITIILCCPMLSIAYYYKSYLIIMLS-VMALSI-IERGINPIGIVASELFPPNVRFSGVSLSRNISFALHGGFTPMICTWLTITFPQINFVAGLYIIFCLLISLIAILQIKSQDKNFDW |
| 2GFP Chain:A ((17-361)) | ---------------VAVGQMAQTIYIPAIADMARDLNVRE-GAVQSVM-----GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT--------VLIAASAMQGMGTGVGGVMARTLPRDLY-ERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---TRLLTSYKTLFG-NSGFNCYLL-MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWF----AGRPNKRFSTLMWQSVICCLLAG-LLMWIPDWFGVMNVWTLLVPAAL-FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL-QNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -269847 for 2858 contacts (-94.4/contact) +
2D Compatibility (PS) -33290 + (NN) 7957 + (LL) 5088
1D Compatibility (HY) -11200 + (ID) 1900
Total energy: -303192.0 ( -106.09 by residue)
QMean score : 0.233
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