Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEEPVEKKWRIKRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRNYVGKLADIFECEEFDYQFLEKLLYKVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELA-NCDTPAPVVINEYTNIASDLLDKPSEIGFINGLLDKAKSAVKLNKNS
1TZW Chain:A ((62-129))
--------------------------------------------------------------------------------DDLISRYLE-KWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSG-KFVNGILDRIAKEHAPKEKF
General information:
TITO was launched using:
RESULT:
Template:
1TZW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46516 for 426 contacts (-109.2/contact) +
2D Compatibility (PS) -6882 + (NN) -1050 + (LL) 6624
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -54824.0 ( -128.69 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1TZW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TZW-query.scw
PDB file :
Tito_Scwrl_1TZW.pdb
: