Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKYNNIVKCPIITEKASFLREKFNKYSLYVFVNVNKHKIKSAIESLFNVKVSSINVVRVKPKYRRFKGVVGYEKKKKKVYFSLMDGQKLDIMSV
5AKA Chain:T ((10-94))
------VLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGG
General information:
TITO was launched using:
RESULT:
Template:
5AKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34165 for 520 contacts (-65.7/contact) +
2D Compatibility (PS) -8806 + (NN) 5287 + (LL) 408
1D Compatibility (HY) -2400 + (ID) 1600
Total energy: -41276.0 ( -79.38 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_5AKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AKA-query.scw
PDB file :
Tito_Scwrl_5AKA.pdb
: