Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFTAIAKAIFVLGILTTSVMITENQSVNAKGKYEKMNRLYDTNKLHQYYSGPSYELTNVSGQSQGYYDSNVLLFNQQNQKFQVFLLGKDENKYK-EKTHGLDVFAVPELVDLDGRIFSVSGVTKKNVKSIFESLRTPNLLVKKIDDKDGFSIDEFFFIQKEEVSLKELDFKIRKLLIKKYKLYEGSADKGRIVINMKDENKYEIDLSDKLDFERMADVINSEQIKNIEVNLK
1M4V Chain:A ((5-204))
-------------------------------AKYENVTK--DIFDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDKHQKFTRIQIFGKDIERLKTRKNPGLDIFVVKEAE----TVFSYGGVTKKNQGAYYDYLNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYKKFPKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVIDGRNIEKMEANIR
General information:
TITO was launched using:
RESULT:
Template:
1M4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49227 for 1455 contacts (-33.8/contact) +
2D Compatibility (PS) -20411 + (NN) -1034 + (LL) 3356
1D Compatibility (HY) -16400 + (ID) 3750
Total energy: -87466.0 ( -60.11 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_1M4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M4V-query.scw
PDB file :
Tito_Scwrl_1M4V.pdb
: