Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQNKRLITISMLSAIAFVLTFIKFPIPFLPPYLTLDFSDVPSLLATFTFGPVAGIVVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNYFVLLPLYGMIFNLADIANNLKVIIVSGIIPFNIIKGIVISIVFILLYRRLANFLKRI
1KCW Chain:A ((246-315))
-----------------------------------------------YTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRI---------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KCW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10907 for 153 contacts (-71.3/contact) +
2D Compatibility (PS) -4588 + (NN) 1691 + (LL) 12820
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -5334.0 ( -34.86 by residue)
QMean score : -0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1KCW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KCW-query.scw
PDB file :
Tito_Scwrl_1KCW.pdb
: