Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLN--QPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
4DR1 Chain:I ((3-128))
----QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEY--FQGLVRAVAALEPLRAVDALGHFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR
General information:
TITO was launched using:
RESULT:
Template:
4DR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21871 for 876 contacts (-25.0/contact) +
2D Compatibility (PS) -13336 + (NN) -6247 + (LL) 700
1D Compatibility (HY) -8400 + (ID) 3200
Total energy: -52354.0 ( -59.76 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_4DR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR1-query.scw
PDB file :
Tito_Scwrl_4DR1.pdb
: